Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015807976.1_cds_XP_016495086.1_9435
CDS Infomation

[gene=LOC107814227] [db_xref=GeneID:107814227] [protein=polygalacturonate 4-alpha-galacturonosyltransferase-like] [protein_id=XP_016495086.1] [location=join(4388..4481,7910..7944,8050..8109,8217..8354,8469..8544,8624..8670,8850..9184,9285..9642,9928..10515,10795..11070)] [gbkey=CDS]
Sequence

ATGGCATTGAAGAGGGGATTATCTGGTGTAGGCTACCCTATTGTGGTTCTCGTGTTCTGT
TCATTTCTGGGCCTGTACAGCTCTACTTCAATTGATCATAGTGATTTTTCAACCACTTCA
AGTAAGCAGGAGTTAGATTGGAGAGAGAGGCTTTCTTTGCAACATTCTAAACCTTTGTTG
ACAACAAAGGTATTTGATGTCATCAAAGCCAGTGCAGATGATTTAGGACCTTTCAGTCTC
GACTCATTCAGAAAGAAGAATTTGTCTGCATCATGGCAATCTGTCGGCGAAGAAAGCTTG
GCCAAGAGCAATACAAATAATGTAGAGGGAAATGAGCCAAATCAGATAGCTGCATATGTC
AAAACAGAGATCTCCAGAGGCAAACAGGATGATCTTGTAGATGATGATCATTCCCAGTTT
TTGGATGCACCTGCTTTTTTGGCCAGAAGGCAATTGAGAGAGAGGAGACGCGAAAAGCAT
GCTGCTGCTTTAGTGAAACAAGATGATGAGGTAACCGTAAAGCTTGAAAATGCTGCCCTT
GAACGCTCTAAGTCAGTTGACTCTGCTGTGCTGGGGAAGTATAGCATATGGAGGAAAGAG
AATGAAAATGAGAATACTGATTCAAAGGTACGCTTGATGCGGGACCAAATGGTTACGGCA
AGGCTGTATATAAGCATTGCAACAATGAAGAAAAAGATTGGCTTGGCTCAAGAGTTAGAG
AATCGGCTTAAAGAAAGTCAGCATGCATTAGGTGAAGCAACATCTGATGCTGATCTAACT
CGCAGTGCACATGAGAAGATTAAATCAATGGACCAAGTGCTTTCAAAAGCTAAAGAGCAG
CTCTATGACTGCAAGCTTGTCACTGGGAAGCTGAGAGCAACGCTGCAGTCTGCCGATGAG
CAAGTTAGAAGTCTGAAGAGGCAGAGCATATTTTTGAGCCAATTAGCTGCAAAGACTATT
CCAAATGGTATCCACTGCTTATCCATGCGTCTGACTATTGATTATTACCTCCTCCCTCCT
GAAAAAAGAAAGTTCCCTAGACGTGAGAATCTGGAAAATCCCCGTCTTTTCCATTATGCC
CTATTCTCTGACAATGTTTTGGCTGCTTCAGTTGTTGTCAACTCAACTATCATGAATGCT
AAGGAACAAGCAAAACATGTATTTCATCTTGTCACTGATAAGTTGAATTTTGGAGCTATG
AATATGTGGTTCTTGCTGAACCCTCCTGGAAAAGCTACAATCCATGTTGAAAATGTAGAC
GAGTTCAAGTGGCTTAATTCTTCATACTGTCCTGTCCTACGGCAGCTAGAGTCTGCTGCT
ATGAAGGAGTACTATTTCAAGGGTGCACATTCCACCACGCTATCAACTAGTTCTTCTAAT
CTGAAGTACCGGAATCCCAAATATCTTTCAATGCTCAATCACCTCAGATTTTATCTTCCT
CAGATTTATCCCAAATTGGATAAAATCCTTTTTCTTGATGATGATATTGTTGTTCAGAAA
GACTTGACGGGACTATGGTCTGTAAATCTTCATGAAAAAGTAAATGGTGCTGTTGAAACA
TGTGGTCAGAGTTTCCACCGTTTTGACAAGTATCTAAATTTTTCAAATCCCCATATTGCC
AAAAACTTTGATCCAAATGCTTGCGGGTGGGCATATGGGATGAACATCTTTGATCTGAAG
GAGTGGAAGAAGAGAGATATTACTGGTATTTATCACAAGTGGCAAAACATGAATGAAGAC
AGGGTCCTCTGGAAGCTAGGGACACTACCTCCAGGGCTAATGACATTTTACGGGCTTACA
CATCCGCTGAATAAGTCATGGCATGTTCTAGGTTTGGGTTACAGCCCAAGCATCGATAGG
TCAGAAATTGAGAATGCAGCTGTGATACATTACAATGGGAACATGAAACCATGGCTAGAG
TTGGCAATGACAAAGTACAGGTCATACTGGGCAAAATATATTAAATTTGATCATCCATAC
ATTCGCAGCTGCAAACTAGGTGAATGA

Peptide Sequence

PEP ID

XP_016495086.1
PEP Infomation

PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like [Nicotiana tabacum]
Sequence

MALKRGLSGVGYPIVVLVFCSFLGLYSSTSIDHSDFSTTSSKQELDWRERLSLQHSKPLL
TTKVFDVIKASADDLGPFSLDSFRKKNLSASWQSVGEESLAKSNTNNVEGNEPNQIAAYV
KTEISRGKQDDLVDDDHSQFLDAPAFLARRQLRERRREKHAAALVKQDDEVTVKLENAAL
ERSKSVDSAVLGKYSIWRKENENENTDSKVRLMRDQMVTARLYISIATMKKKIGLAQELE
NRLKESQHALGEATSDADLTRSAHEKIKSMDQVLSKAKEQLYDCKLVTGKLRATLQSADE
QVRSLKRQSIFLSQLAAKTIPNGIHCLSMRLTIDYYLLPPEKRKFPRRENLENPRLFHYA
LFSDNVLAASVVVNSTIMNAKEQAKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVD
EFKWLNSSYCPVLRQLESAAMKEYYFKGAHSTTLSTSSSNLKYRNPKYLSMLNHLRFYLP
QIYPKLDKILFLDDDIVVQKDLTGLWSVNLHEKVNGAVETCGQSFHRFDKYLNFSNPHIA
KNFDPNACGWAYGMNIFDLKEWKKRDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYGLT
HPLNKSWHVLGLGYSPSIDRSEIENAAVIHYNGNMKPWLELAMTKYRSYWAKYIKFDHPY
IRSCKLGE

Transcript Sequence

Gene sequence data has not been registered.